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HomeGlossaryMSC Chain of Custody
Compliance · The complete guide

MSC Chain of CustodyMarine Stewardship Council Chain of Custody

In short

The Marine Stewardship Council (MSC) Chain of Custody Standard is the global benchmark for ensuring the traceability of sustainable seafood from a certified fishery to the final consumer.

2,115 words · ~10 min read
Fresh fish on ice at a seafood processing facility
Fresh fish on ice at a seafood processing facility
On this page
  1. 01What is MSC Chain of Custody?
  2. 02Who Needs MSC CoC Certification?
  3. 03The Three Variants of the Standard
  4. 04Core Principles of the Standard
  5. 05Physical Segregation vs. Mass Balance
  6. 06The MSC Ecolabel Rules
  7. 07The Certification Journey: Audits and Validity
  8. 08ERP and Warehouse Record Requirements
  9. 09Management Systems and Training
  10. 10Common Compliance Gaps
  11. 11How V5 Ultimate Supports MSC Compliance
On this page · 11 sections
  1. 1What is MSC Chain of Custody?
  2. 2Who Needs MSC CoC Certification?
  3. 3The Three Variants of the Standard
  4. 4Core Principles of the Standard
  5. 5Physical Segregation vs. Mass Balance
  6. 6The MSC Ecolabel Rules
  7. 7The Certification Journey: Audits and Validity
  8. 8ERP and Warehouse Record Requirements
  9. 9Management Systems and Training
  10. 10Common Compliance Gaps
  11. 11How V5 Ultimate Supports MSC Compliance
AI · Explain it for MY operation

How does MSC Chain of Custody apply to your shop floor?

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01What is MSC Chain of Custody?

The Marine Stewardship Council (MSC) Chain of Custody (CoC) Standard is a traceability program designed to ensure that seafood sold with the MSC blue ecolabel comes from a fishery that has been certified to the MSC Fisheries Standard for sustainable fishing. While the Fisheries Standard focuses on the health of fish stocks and the management of the marine environment, the Chain of Custody Standard focus is entirely on the supply chain. It provides a mechanism for tracking seafood products through every stage of processing, distribution, and sale, ensuring that certified sustainable seafood is not mixed with or replaced by non-certified product 1.

For a product to carry the MSC blue label, every business in the supply chain that takes legal ownership of the seafood must hold a valid Chain of Custody certificate. This creates an unbroken chain of accountability from the boat to the plate. If a single link in the chain—such as a processor, a wholesaler, or a re-packer—is not certified, the product loses its right to be sold as MSC-certified sustainable seafood. This rigor is what maintains consumer trust in the label and supports the market for sustainable fishing practices.

Traceability Vs. Sustainability

It is important to distinguish between the two. The Fisheries Standard certifies that the fish was caught sustainably. The Chain of Custody Standard certifies that the fish you are buying is actually the fish that was caught sustainably. One cannot function effectively without the other.

02Who Needs MSC CoC Certification?

Generally, any organisation that takes legal ownership of MSC-certified seafood and wishes to sell it as MSC-certified or use the MSC ecolabel must be certified. This includes a wide range of businesses across the global seafood supply chain 4.

  • Primary processors who receive fish directly from the fishery.
  • Secondary processors who further process, fillet, or package seafood.
  • Traders and wholesalers who buy and sell certified products.
  • Distributors and logistics providers who take ownership of the goods.
  • Catering and food service companies that serve MSC-certified seafood.
  • Retailers who package or process fish in-store (e.g., fresh fish counters).

Organisations that do not take legal ownership—such as freight forwarders or third-party storage facilities that only handle sealed containers—may not require their own certification, provided they are covered by the owner's certification and management system. However, they are still subject to the traceability and segregation requirements of the standard.

03The Three Variants of the Standard

To accommodate the diverse nature of the seafood industry, the MSC provides three versions of the Chain of Custody Standard. Each version is tailored to different business models and operational scales 2.

1. Default Version (v5.1)

The Default version is the most common and applies to single-site or multi-site organisations where each site is managed individually or under a central quality management system. It is designed for processors, traders, and wholesalers who handle certified products in a standard commercial environment 1.

2. Group Version (v2.1)

The Group version is intended for organisations with many small sites, such as a large restaurant chain, a franchise, or a group of independent fishmongers under a central office. The central office takes responsibility for the management system and internal audits, while the individual sites are audited by the certification body on a sampling basis 3.

3. Consumer-Facing Organisation (CFO) Version (v2.1)

The CFO version is specifically for businesses selling seafood directly to the final consumer, such as restaurants, fish and chip shops, and supermarket fish counters. It focuses on the point of sale and the need to communicate the certified status to the customer, while ensuring that the internal handling of the product prevents mix-ups 2.

04Core Principles of the Standard

The MSC Chain of Custody Standard is built on five core principles that must be met by every certified organisation. These principles provide the framework for a robust traceability system 3.

  1. **Certified products are purchased from certified suppliers:** Organisations must verify the certification status of their suppliers and ensure that the products they receive are indeed certified. This involves checking the MSC database and ensuring the supplier's certificate is valid and covers the relevant species.
  2. **Certified products are identifiable:** Certified seafood must be clearly marked at all times. This includes labelling on crates, bins, and pallets during storage and processing, as well as clear identification in the ERP or inventory system.
  3. **Certified products are segregated:** Certified and non-certified products must be physically separated. This prevents accidental mixing or substitution. Segregation can be achieved through dedicated storage areas, specific production times, or clearly defined physical barriers.
  4. **Certified products are traceable and volumes are recorded:** Every batch of certified seafood must be traceable from receipt to sale. Organisations must maintain accurate records of the quantities of certified seafood purchased, processed, and sold, allowing for a mass-balance reconciliation.
  5. **The organisation's management system addresses the requirements:** The business must have a documented management system that includes staff training, record-keeping procedures, and a process for handling non-conforming products. This ensures that the requirements are consistently met over time.

05Physical Segregation vs. Mass Balance

One of the most critical technical aspects of the MSC CoC Standard is the requirement for physical segregation. Unlike some other sustainability schemes that allow for 'mass balance' at the product level (where certified and non-certified products are mixed and a percentage is sold as certified), the MSC generally requires that the physical product carrying the label is truly from a certified source 4.

In the MSC context, 'mass balance' refers to the administrative reconciliation of inputs and outputs. An auditor will check that the volume of MSC-certified salmon sold does not exceed the volume of MSC-certified salmon purchased, accounting for yield factors. However, this administrative check does not replace the requirement for physical segregation during production. If a processor runs a batch of certified cod followed by a batch of non-certified cod, they must ensure the line is cleared and the products are never mixed.

Mass Balance Limitations

You cannot mix certified and non-certified seafood in the same vat and claim a percentage of the output as MSC-certified. The MSC Ecolabel requires physical integrity of the certified stream.

For manufacturers using highly integrated systems, this means the batch-record and audit-trail must explicitly show the transition between certified and non-certified streams, often supported by cleaning logs or 'break' timestamps in the production record.

06The MSC Ecolabel Rules

The MSC blue ecolabel is a registered trademark and its use is strictly controlled. Certified organisations must sign a license agreement with MSC International (MSCI) before they can use the label on products, menus, or promotional materials.

  • **Approval Process:** Every piece of artwork featuring the MSC label must be submitted to the MSCI for approval before printing.
  • **Label Elements:** The label must include the MSC blue fish logo, the trademark 'Certified Sustainable Seafood', and the organisation's unique Chain of Custody code.
  • **Species Verification:** The label can only be applied to products containing seafood from a fishery that was certified at the time of harvest.
  • **Minimum Seafood Content:** For a product to carry the label, 95% of the total seafood content must be MSC-certified.

Failure to follow these rules can lead to the suspension of the CoC certificate and legal action for trademark infringement. Organisations often use their quality management system to track label approvals and ensure that only authorised versions of packaging are used in production.

07The Certification Journey: Audits and Validity

MSC does not perform the audits itself. Instead, it relies on a network of accredited independent certification bodies (CABs). These CABs are themselves monitored by Assurance Services International (ASI) to ensure consistency and impartiality 4.

The Audit Process

  • **Pre-audit:** The organisation prepares its management system and records.
  • **On-site Audit:** The auditor visits the site, inspects storage areas, observes production, interviews staff, and reviews records.
  • **Reporting:** The auditor identifies any non-conformities that must be addressed.
  • **Certification Decision:** Once non-conformities are closed, the CAB issues the certificate.

Chain of Custody certificates are typically valid for three years, subject to annual surveillance audits. In some cases, high-risk organisations or those with previous non-conformities may be subject to unannounced audits.

08ERP and Warehouse Record Requirements

To satisfy the traceability requirements of Principle 4, a manufacturer's ERP or warehouse management system must maintain detailed records. These records are the primary evidence used during an audit to prove that no mixing or substitution occurred.

Record TypeMandatory Data PointsRegulatory Purpose
Goods ReceiptSupplier Name, CoC Code, Species (Scientific Name), Lot Number, Weight, Certified StatusVerify certified source and supplier validity
Inventory LogStorage Location, Lot ID, Identification Status (e.g., 'MSC Certified')Ensure physical segregation and clear identification
Production RecordInput Lot IDs, Output Lot IDs, Yield Calculation, Line Clearance ConfirmationTraceability from raw material to finished product
Sales RecordCustomer Name, Product Name, Quantity, MSC CoC Code on InvoiceEnsure volumes sold do not exceed volumes purchased

The system should also store copies of supplier coa and coc documents, which often carry the MSC claim for specific shipments. Modern systems use serial-traceability to automate the link between the receipt and the final sale, reducing the risk of human error in mass-balance calculations.

09Management Systems and Training

Principle 5 requires a documented management system. This is not just about having a manual on a shelf; it is about ensuring that the MSC requirements are integrated into the daily operations of the business. Key components include:

  • **Staff Training:** All personnel involved in handling certified seafood must be trained on the importance of segregation and identification. Training-records must be maintained and updated regularly.
  • **Non-Conforming Product:** There must be a clear procedure for what to do if certified product is accidentally mixed with non-certified product. This usually involves removing the MSC claim from the affected batch.
  • **Subcontractor Management:** If the organisation uses third-party processors or warehouses, they must ensure these subcontractors are either certified themselves or covered under the organisation's own scope.

10Common Compliance Gaps

During audits, certain areas frequently emerge as points of failure. Understanding these pitfalls can help organisations prepare more effectively.

  • **Inadequate Supplier Verification:** Failing to check the MSC database to ensure a supplier's certificate has not expired or been suspended.
  • **Poor Identification in Storage:** Leaving bins or crates of fish unmarked, leading to confusion during busy production shifts.
  • **Mass-Balance Discrepancies:** Failing to account for moisture loss or trim waste in yield calculations, leading to an apparent 'creation' of certified fish.
  • **Missing CoC Code on Invoices:** The standard requires that the MSC claim and the organisation's CoC code be clearly stated on every invoice and delivery note for certified products.

11How V5 Ultimate Supports MSC Compliance

The V5 platform is designed to automate the heavy lifting of traceability and record-keeping required by the MSC Chain of Custody Standard. By integrating these requirements into the core manufacturing workflow, V5 helps ensure that compliance is a byproduct of production, not a separate administrative burden.

MSC Automation in V5

V5 enforces MSC-certified status at the inbound-receiving stage, requiring the entry of a valid CoC code and supplier lot number. The system then maintains a 'hard' link through the production process, automatically generating mass-balance reports and flagging any attempts to mix certified and non-certified lots in the same work order.

Key features include automated electronic-batch-record generation, real-time yield monitoring to support mass-balance reconciliation, and a centralized document vault for storing supplier certificates and ecolabel approvals. In the event of a quality issue, V5's mock-recall tools can trace an MSC-certified batch back to the fishery in minutes, providing the high level of supply chain assurance required by modern retailers.

Frequently asked questions

Q.Does MSC certification cover social and labour issues?+

Yes, since 2019, the MSC has introduced requirements regarding forced and child labour. Certified organisations must complete a self-assessment and may be subject to social audits if they are operating in high-risk countries. However, the primary focus remains on environmental sustainability and traceability.

Q.Can I use the MSC label if my company is not certified but my supplier is?+

No. For a product to carry the label, the entire chain of ownership must be certified. If you take ownership of the product and wish to sell it with the label, you must hold your own Chain of Custody certificate.

Q.What is the difference between MSC and ASC?+

MSC (Marine Stewardship Council) focuses on wild-catch fisheries. ASC (Aquaculture Stewardship Council) focuses on farmed seafood. While they are separate organisations, they share the same Chain of Custody Standard, meaning a single CoC audit can cover both MSC and ASC products.

Q.How long does the certification process take?+

The timeline varies depending on the complexity of the business and the availability of the auditor. Generally, it takes between two and four months from the initial application to the issuance of the certificate.

Primary sources

  • MSC Chain of Custody Standard: Default Version v5.1
  • MSC Chain of Custody Standard: Group Version v2.1
  • MSC Chain of Custody Certification Guide
  • Chain of Custody Program Documents

Further reading

  • Batch Manufacturing Records
    Learn how detailed production logs support traceability requirements.
  • Certificate of Analysis
    Understanding the role of laboratory certificates in verifying material status.
  • Audit Trail Compliance
    Ensuring that every change in your digital records is tracked and attributed.
  • Serial Traceability
    Moving beyond batch-level tracking to individual unit identification.
Talk to us about MSC Chain of Custody

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Back to glossary
Where this term comes up
Food Processing
Inside V5
  • → Score your compliance gap — then download the validation pack.
  • → Document control — one version in force, every change signed and explained.
  • → QMS — quality records next to the work they concern.
Related terms
  • → ASC Chain of Custody
  • → M&S Code of Practice
  • → Waitrose Quality Standards

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